miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|309342794|gb|HO827554.1|HO827554 TTTGGAGAAGGTGTCTCCTACTTCCCCTGATTTGTTTCATACTGTGTTTGATGACAAGATTTGTTCCTTTTCTGGATATT
GGTTATGCTACTTCTCTAATCTTCTGTTTTTCTGGGAATCCAGTTTCAGTTTTTAGTGAGTAGTTTCGCAATTTAAACAA
TCCGGAATGGAGCGTTCTTATGATTCAGTTACTGATGATGATTCTCCAAATCCCGGTAGAAAGATTATCATGCACCCTCT
TTACCTCTCAAGATCATCACCATGGTTTGAACTCAGAGTGTTTTATGTGAGATTAAGCAACTTTGAGGTTGATGATTATA
CTCCTGAGCATCTCACCCTTAATCACATACCACTCACTCCCGATACGATTTTTGAAATGAATGGAAAAAGAAGTGGTATC
TATTCAGATTGTGTCTCATCTTCACTAAGACGGGATAGGGTCGATAAGAAATCAGATGAAGCTACCTTTGTGAGCACAGA
TAGCTTAAGGATCACAGGAAGTGTGAGATTTGAGGTCTATGACAAAGATGATCTTTTGTTATGTGGAGTCCTTGAATTGT
GCAATGGCAATGGTTATGTGAAGGAGTCAAAAATTCACAGTAAGAAATGGAACATGAAGTGCCAATCTTCAGTATCACCT
GGCTCGAGCTTCTTAAAGGGAAAGCAATATATGACTGTGGATGTTCCTTCGCCGACCGTCGAGGTGTATGTTGCTGGCTG
TTTCTCCGGTACTCCTATCATCTTGACTAAGACTCTTCAGCTTGGTTTTCGGAAGAAACACCAGATGAAGGCGATGCTTA
ATTGCATACCGGAGTATGAGGGCATCACTGATAAGAAGAAAGAATCACCATTTGAGGATCCTTTACAGTTATCAGAATAC
CAAGATTACAAAACCGAAAATTATATGGACATGGACTACAACAGTATTTACTCTAGAGCAGAATTCATCGACGAGGATGG
TGAGCTTTCATGGTTCAATGCTGGTGTGAGAGTTGGTGTGGGTATCGGCCTTGGAGTCTGCGTAGGCGTTGGCATCGGCG
TCAGTTTACTTATTCGAACATATCAAGCAACCACTCGGAACTTTAGACGACGGCTCATTTGATGCCGAGACAACTAGTTT
TATCATCCTAGTATTTCCATAAAGCAGCTAACTTTGTGTTCTCTTTCATGGAGTTTGTTCATACTGTGAATTTGTTCTGG
TTTTTGGAGTTGCTGACAAAGTTCAGTAGTCTTCTCTCTTGCTATAGCAATAATGTTGGAACTAAGAAACTATATATATA
CATATATATATGCAATTATACTATGAAACTATATTAGTATTACTTC




Most similar to sp|Q8GUH2|Y1015_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8GUH2|Y1015_ARATH Uncharacterized protein At1g01500
            OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1
          Length = 327

 Score =  170 bits (430), Expect = 3e-41
 Identities = 118/329 (35%), Positives = 162/329 (49%), Gaps = 17/329 (5%)
 Frame = +3

Query: 168  GMERSYDSVTDDDSP-NPGRKIIMHPLYLSRSSPWFELRVFYVRLSNFEVDDYTPEHLTL 344
            G  +SY   T   SP +P   I +        S W E+R+FYVR++   V++  P+ LTL
Sbjct: 14   GTTKSYHMNTSTVSPPSPASSISLS------QSAWLEVRLFYVRIAPCVVEN-VPDFLTL 66

Query: 345  NHIPLTPDTIFEMNGKRSGIYSDCVSSSLRRDRVDKKSDEATFVSTDSLRITGSVRFEVY 524
             H         E+NG R    S   S  LRRDRVD++S E T+VST+++R+TG V FEVY
Sbjct: 67   RHPRRETGASLEVNGVRVPS-SQTASLKLRRDRVDRESSEVTYVSTETVRVTGCVDFEVY 125

Query: 525  DKDDLLLCGVLELCNG---NGYVKESKIHSKKWNMKCQSSVSPG-------SSFLKGKQY 674
            D +D++LCG L+   G   NG V + K     W M C  ++  G       S F + K  
Sbjct: 126  DNEDMVLCGNLDRIEGAWNNGTVSDPK---TGWGMDCYIAMGNGHVSGPSASVFFQPK-- 180

Query: 675  MTVDVPSPTVEVYVAGCFSGTPIILTKTLQLGFRKKHQMKAMLNCIPEYEGITDKKKESP 854
                V SP+VEVY+AGC  G P+ILTKT+Q   R+K      L+ IPE E +  ++    
Sbjct: 181  --FGVSSPSVEVYIAGCCGGVPVILTKTIQASPRRKVARHVTLDAIPEDEEVGKEQDIGT 238

Query: 855  FEDPLQLS---EYQDYKTENYMDMDY---NSIYSRAEFIDEDGELSWFNAXXXXXXXXXX 1016
              D L      +  + + + Y D D       Y    ++DEDG+LSWFNA          
Sbjct: 239  IGDELARQSKVQMMESEVDEYDDSDMKMAQRYYPEGMYVDEDGQLSWFNAGVRVGVGIGL 298

Query: 1017 XXXXXXXXXXXXXXRTYQATTRNFRRRLI 1103
                          R+YQATT N RRR +
Sbjct: 299  GMCLGVGIGVGLLMRSYQATTSNLRRRFL 327